Survival-associated eQTLs across different cancer types
We identified 22,212 eQTLs associated with patient overall survival across different cancer types at FDR < 0.05.
|
Cancer type
|
SNP ID
|
SNP position (hg19)
|
Alleles (A/a)
|
log-rank test p-value
|
Sample size
|
Median survival time AA
|
Median survival time Aa
|
Median survival time aa
|
|
|---|---|---|---|---|---|---|---|---|---|
| THCA | rs12748456 | chr1:22370157 | G/A | 1.08E-8 | 469 | 15.17 | 17.83 | 6.57 | KM Plot |
| THCA | rs12749658 | chr1:45983348 | A/G | 4.82E-5 | 487 | 10.6 | 16.3 | 16.92 | KM Plot |
| THCA | rs12751711 | chr1:184029718 | C/T | 7.58E-6 | 490 | 21.65 | 17.47 | 15 | KM Plot |
| THCA | rs12759837 | chr1:184019184 | A/G | 3.33E-16 | 489 | 15.17 | 17.83 | 17.77 | KM Plot |
| THCA | rs12763012 | chr10:81641198 | T/C | 2.33E-5 | 477 | 15 | 17.93 | 6.03 | KM Plot |
| THCA | rs12773636 | chr10:82262407 | G/T | 1.35E-6 | 485 | 16.37 | 14.93 | 14.93 | KM Plot |
| THCA | rs12778616 | chr10:118444538 | T/C | 4.68E-5 | 488 | 15.83 | 16.2 | 13.83 | KM Plot |
| THCA | rs12786099 | chr11:96137346 | A/G | 4.34E-8 | 478 | 15.77 | 15.5 | 18.1 | KM Plot |
| THCA | rs12791333 | chr11:96077772 | C/T | 6.57E-5 | 490 | 15.7 | 15.78 | 25.07 | KM Plot |
| THCA | rs12792853 | chr11:96174475 | A/C | 0.000283 | 484 | 15.23 | 16.52 | 16.8 | KM Plot |
| THCA | rs12796114 | chr11:112049140 | A/C | 4.19E-5 | 483 | 16.37 | 16.23 | 12.37 | KM Plot |
| THCA | rs12796830 | chr11:96114165 | C/T | 4.69E-6 | 487 | 15.87 | 16.13 | 17.73 | KM Plot |
| THCA | rs12797756 | chr11:96138156 | T/C | 4.34E-8 | 478 | 15.77 | 15.5 | 18.1 | KM Plot |
| THCA | rs12797880 | chr11:112049191 | T/C | 3.71E-5 | 486 | 15.97 | 16.27 | 12.37 | KM Plot |
| THCA | rs12812346 | chr12:1068184 | T/C | 0.000119 | 470 | 16.3 | 15.15 | 9.32 | KM Plot |